Open amarinderthind opened 3 weeks ago
Error log
2024/06/21 15:20:42 cravat input assembly: hg38
2024/06/21 15:20:42 cravat version: open-cravat 2.4.1 C:\Program Files\OpenCRAVAT\python\lib\site-packages\cravat 2024/06/21 15:20:42 cravat version: cadd_exome 1.6.1 C:\open-cravat\modules\annotators\cadd_exome 2024/06/21 15:20:42 cravat version: cgc 99.0.0 C:\open-cravat\modules\annotators\cgc 2024/06/21 15:20:42 cravat version: cgl 1.1.0 C:\open-cravat\modules\annotators\cgl 2024/06/21 15:20:42 cravat version: encode_tfbs 1.0.2 C:\open-cravat\modules\annotators\encode_tfbs 2024/06/21 15:20:42 cravat version: genehancer 1.1.0 C:\open-cravat\modules\annotators\genehancer 2024/06/21 15:20:42 cravat version: mirbase 1.0.1 C:\open-cravat\modules\annotators\mirbase 2024/06/21 15:20:42 cravat version: mutpanning 1.0.0 C:\open-cravat\modules\annotators\mutpanning 2024/06/21 15:20:42 cravat version: ncrna 2022.12.12 C:\open-cravat\modules\annotators\ncrna 2024/06/21 15:20:42 cravat version: hg38 1.11.0 C:\open-cravat\modules\mappers\hg38 2024/06/21 15:20:42 cravat.converter started: Fri Jun 21 15:20:42 2024 2024/06/21 15:20:42 cravat.converter Input file(s): C:\open-cravat\jobs\default\240621-151850\CSCC_0016-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0017-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0018-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0026-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0029-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0137-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0141-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0160-P1.purple.somatic.vcf 2024/06/21 15:20:46 cravat.converter input format: vcf 2024/06/21 15:35:52 cravat.converter error lines: 0 2024/06/21 15:35:52 cravat.converter finished: Fri Jun 21 15:35:52 2024 2024/06/21 15:35:52 cravat.converter num input lines: 5261653 2024/06/21 15:35:52 cravat.converter runtime: 906.004 2024/06/21 15:35:52 cravat num_workers: 25 2024/06/21 15:35:56 cravat input line chunksize=208721 total number of input lines=5218035 number of chunks=25 2024/06/21 15:40:19 cravat An unexpected exception occurred. Traceback (most recent call last): File "C:\Program Files\OpenCRAVAT\python\lib\site-packages\cravat\cravat_class.py", line 567, in main self.populate_secondary_annotators() File "C:\Program Files\OpenCRAVAT\python\lib\site-packages\cravat\cravat_class.py", line 1172, in populate_secondary_annotators self._find_secondary_annotators(module, secondaries) File "C:\Program Files\OpenCRAVAT\python\lib\site-packages\cravat\cravat_class.py", line 1197, in _find_secondary_annotators ret[sannot.name] = sannot AttributeError: 'NoneType' object has no attribute 'name' 2024/06/21 15:40:19 cravat finished with an exception: Fri Jun 21 15:40:19 2024 2024/06/21 15:40:19 cravat runtime: 1178.235s`
Error log
2024/06/21 15:20:42 cravat version: open-cravat 2.4.1 C:\Program Files\OpenCRAVAT\python\lib\site-packages\cravat 2024/06/21 15:20:42 cravat version: cadd_exome 1.6.1 C:\open-cravat\modules\annotators\cadd_exome 2024/06/21 15:20:42 cravat version: cgc 99.0.0 C:\open-cravat\modules\annotators\cgc 2024/06/21 15:20:42 cravat version: cgl 1.1.0 C:\open-cravat\modules\annotators\cgl 2024/06/21 15:20:42 cravat version: encode_tfbs 1.0.2 C:\open-cravat\modules\annotators\encode_tfbs 2024/06/21 15:20:42 cravat version: genehancer 1.1.0 C:\open-cravat\modules\annotators\genehancer 2024/06/21 15:20:42 cravat version: mirbase 1.0.1 C:\open-cravat\modules\annotators\mirbase 2024/06/21 15:20:42 cravat version: mutpanning 1.0.0 C:\open-cravat\modules\annotators\mutpanning 2024/06/21 15:20:42 cravat version: ncrna 2022.12.12 C:\open-cravat\modules\annotators\ncrna 2024/06/21 15:20:42 cravat version: hg38 1.11.0 C:\open-cravat\modules\mappers\hg38 2024/06/21 15:20:42 cravat.converter started: Fri Jun 21 15:20:42 2024 2024/06/21 15:20:42 cravat.converter Input file(s): C:\open-cravat\jobs\default\240621-151850\CSCC_0016-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0017-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0018-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0026-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0029-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0137-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0141-P1.purple.somatic.vcf, C:\open-cravat\jobs\default\240621-151850\CSCC_0160-P1.purple.somatic.vcf 2024/06/21 15:20:46 cravat.converter input format: vcf 2024/06/21 15:35:52 cravat.converter error lines: 0 2024/06/21 15:35:52 cravat.converter finished: Fri Jun 21 15:35:52 2024 2024/06/21 15:35:52 cravat.converter num input lines: 5261653 2024/06/21 15:35:52 cravat.converter runtime: 906.004 2024/06/21 15:35:52 cravat num_workers: 25 2024/06/21 15:35:56 cravat input line chunksize=208721 total number of input lines=5218035 number of chunks=25 2024/06/21 15:40:19 cravat An unexpected exception occurred. Traceback (most recent call last): File "C:\Program Files\OpenCRAVAT\python\lib\site-packages\cravat\cravat_class.py", line 567, in main self.populate_secondary_annotators() File "C:\Program Files\OpenCRAVAT\python\lib\site-packages\cravat\cravat_class.py", line 1172, in populate_secondary_annotators self._find_secondary_annotators(module, secondaries) File "C:\Program Files\OpenCRAVAT\python\lib\site-packages\cravat\cravat_class.py", line 1197, in _find_secondary_annotators ret[sannot.name] = sannot AttributeError: 'NoneType' object has no attribute 'name' 2024/06/21 15:40:19 cravat finished with an exception: Fri Jun 21 15:40:19 2024 2024/06/21 15:40:19 cravat runtime: 1178.235s`