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KarchinLab / open-cravat

A modular annotation tool for genomic variants
MIT License
115 stars 27 forks source link

Share result viewer publicly #298

Open tkmamidi opened 1 month ago

tkmamidi commented 1 month ago

Thank you so much for working on this awesome tool!

Is there a way I can share the result viewer with other folks publicly once the annotation is done?

Thanks!

jasminebro commented 1 month ago

Hi @tkmamidi! Are you trying to share the interactive results viewer or an export of the annotations?

tkmamidi commented 1 week ago

I'm trying to share the interactive results viewer. It would be easy for me to annotate variants on the GUI and share them with the group for curation.

jasminebro commented 1 week ago

Hi @tkmamidi . One way to share your results is to package them as an annotator. Would this be a viable solution or are you aiming for something else? I shared the documentation on how to develop an annotator below.

Jasmine

https://open-cravat.readthedocs.io/en/latest/Annotator-Tutorial.html

tkmamidi commented 3 days ago

Thanks for sharing the annotator tutorial. I can work on adding DITTO as an annotator.

However, I'd like to share the GUI page (result viewer) with folks in our group who doesn't have experience with coding.

jasminebro commented 16 hours ago

Hi @tkmamidi ! Another option is to download your results as a sqlite file. Send the sqlite results file to the other user who can install opencravat and then open the sqlite results in the GUI.

tkmamidi commented 11 hours ago

Appreciate the alternative but some folks are PIs and bench scientists that are not comfortable with running commands. It's super helpful if there's a share button that makes the page public! Thanks!