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KarchinLab / open-cravat

A modular annotation tool for genomic variants
MIT License
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ncer annotator? #87

Closed EugeneEA closed 1 year ago

EugeneEA commented 2 years ago

Hi, I'm digging into ncer annotator db (as an easy way to extract scores for some other analysis) and noticed, that there are few rows in the db where beg int > end int (here for example): sqlite> select * from chr1 where beg == 451677; 588|451677|451666|96.396289

(CREATE TABLE chr1 (bin int, beg int, end int, score real); It does look a bit suspiciouse for me so may be there are some issues here

Best, Eugene

rkimkiromic commented 2 years ago

@EugeneEA Thanks for letting us know. We'll investigate and get back to you.

mstucky commented 1 year ago

The issue with reversed beginning and ending locations has been resolved. The database has been rebuilt with the latest data from Telentilab as well. It is now published to the store.