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KarrLab / bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins
https://www.bpforms.org
MIT License
6 stars 2 forks source link

Residues on the protein alphabet website do not bond to left or right #110

Closed paulflang closed 3 years ago

paulflang commented 3 years ago

The residues on the protein alphabet website do not bond to left or right. Not sure if this is intended. The YAML file shows left- and right-bond atoms.

jonrkarr commented 3 years ago

I see left and right bonding sites colored blue and green. What specifically are you referring to?

paulflang commented 3 years ago

Binds left? and Binds right? image

jonrkarr commented 3 years ago

Basically, the two colors mean there are two binding sites. One color means one binding site (i.e. an N or C cap). Zero colors means no binding sites (this would be a fairly uninteresting case because this means a residue with is both an N and a C cap).

paulflang commented 3 years ago

But why do Binds left? and Binds right? both say No?

jonrkarr commented 3 years ago

Looks like the JS script was never updated when the properties were renamed. I fixed this.