Add examples to website - Githubissues

KarrLab / bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins

https://www.bpforms.org

MIT License

6 stars 2 forks source link

Add examples to website #71

Closed jonrkarr closed 5 years ago

jonrkarr commented 5 years ago

Language integrations (Done)

Pathways: BioPAX
Systems biology
- SBML/BioModels
- CellML/Physiome Model Repository
Synthetic biology: SBOL
- https://synbiohub.org/public/bsu/BO_9329/1
- BacillOndex
- ~~Frequently used iGEM parts~~
- ~~http://www.cbrc.kaust.edu.sa/sbolme/catalog.html~~

Case studies (TODO)

Proteomics
- PRO
- UniProt
Transcriptomics
Epigenetics
Models
- Marc Birtwistle model
- Models miss species because treated sites as identical
- Difficult to compose models because other sites involved in other pathways
Genetic designs
- Difficult to compose parts because parts have insufficient information about their biosynthesis (including post-transcriptional and post-translational modification)

jonrkarr commented 5 years ago

Done