Use ontology to abstract away atomic details of crosslinks - Githubissues

KarrLab / bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins

https://www.bpforms.org

MIT License

6 stars 2 forks source link

Use ontology to abstract away atomic details of crosslinks #93

Closed jonrkarr closed 5 years ago

jonrkarr commented 5 years ago

Examples

disulfide bond MI:0408
Gln-Lys cross-link catalyzed by a transglutaminase. transglutamination MI:0556
http://bioportal.bioontology.org/ontologies/PSIMOD/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMOD_00033

Todo

~~Build ontology~~
~~Add webpage which lists crosslinks along with images~~
~~Extend grammar~~
Expand software
~~Add examples to webpage~~

jonrkarr commented 5 years ago

Done