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KarrLab
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bpforms
Toolkit for concretely describing non-canonical DNA, RNA, and proteins
https://www.bpforms.org
MIT License
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Merge PDB CCD DNA and RNA residues in alphabets
#94
Closed
jonrkarr
closed
5 years ago
jonrkarr
commented
5 years ago
DNA
DNA linking: 368
DNA OH 5 prime terminus: 2
DNA OH 3 prime terminus: 3
L-DNA linking: 4
RNA
RNA linking: 269
RNA OH 5 prime terminus: 1}
RNA OH 3 prime terminus: 1
L-RNA linking: 5
Protein
L-peptide linking: 1074
L-peptide NH3 amino terminus: 12
L-peptide COOH carboxy terminus: 9
L-beta-peptide C-gamma linking: 1
L-gamma-peptide C-delta linking: 1
D-peptide linking: 119
D-peptide NH3 amino terminus: 2
D-beta-peptide C-gamma linking: 1
D-gamma-peptide C-delta linking: 1
peptide linking: 75
peptide-like: 525
jonrkarr
commented
5 years ago
Merge alphabets
Update numbers of monomers in website and paper
jonrkarr
commented
5 years ago
Done
DNA
RNA
Protein