Curate protein localizations

[jonrkarr]

• Prokaryotes
  • [x] http://db.psort.org/search/results?dataset=e
    • Download
    • Experimental observations
    • Computational predictions
    • Article: PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures (10.1093/nar/gkv1271)
• Human
  • [ ] Table S3 of SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization (10.1016/j.molcel.2018.11.035)
  • Related website: http://www.subcellbarcode.org/
  • [x] https://www.proteinatlas.org/
  • Download
  • Article: A subcellular map of the human proteome (10.1126/science.aal3321)
  • [x] Human Protein Reference database: ignore because old
  • Download -- doesn't work
  • Article: Human Protein Reference Database—2009 update (10.1093/nar/gkn892)
• Multiple organisms
  • [ ] UniProt.org Subcellular location [CC]
    • Download
    • Article: UniProt: a worldwide hub of protein knowledge (10.1093/nar/gky1049)
  • [x] Eukaryotic Subcellular Localization DataBase --old, downloads don't work
  • Download -- doesn't work
  • Article: eSLDB: eukaryotic subcellular localization database (10.1093/nar/gkl775)
  • [x] locDB -- old, no download
    • Browse
  • Article: LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana (10.1093/nar/gkq927)

[lzy7071]

Needs sample schema.