Kinetics endpoint fails for some reactions when an organism is included - Githubissues

KarrLab / datanator_rest_api

A OAS3 compliant REST API for the Datanator integrated database

MIT License

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Kinetics endpoint fails for some reactions when an organism is included #114

Closed jonrkarr closed 4 years ago

jonrkarr commented 4 years ago

Example

L-lactate dehydrogenase
- Succeeds without organism: https://testapi.datanator.info/reactions/kinlaw_by_rxn/?_from=0&size=1000&bound=loose&dof=0&substrates=GPRLSGONYQIRFK-UHFFFAOYSA-N,LCTONWCANYUPML-UHFFFAOYSA-N,BOPGDPNILDQYTO-NNYOXOHSSA-N&products=JVTAAEKCZFNVCJ-REOHCLBHSA-N,BAWFJGJZGIEFAR-NNYOXOHSSA-O
- Fails with organism: https://testapi.datanator.info/reactions/kinlaw_by_rxn/?_from=0&size=1000&bound=loose&dof=0&substrates=GPRLSGONYQIRFK-UHFFFAOYSA-N,LCTONWCANYUPML-UHFFFAOYSA-N,BOPGDPNILDQYTO-NNYOXOHSSA-N&products=JVTAAEKCZFNVCJ-REOHCLBHSA-N,BAWFJGJZGIEFAR-NNYOXOHSSA-O&taxon_distance=true&species=Saccharomyces%20cerevisiae

lzy7071 commented 4 years ago

Temporarily fixed. Need to update sabio_rk collection to pull in updated taxon information.