Closed jonrkarr closed 4 years ago
reaction documents now contain a field called ec_meta
If an EC number has cofactor information, there will be a field called cofactor
contained in the ec_meta
object.
reaction document now may contain a field named kegg_meta
(depending on if an enzyme subunit has corresponding kegg info or not).
Thanks! Does it currently return pathway information? If not, can we include that?
Thanks! Does it currently return pathway information? If not, can we include that?
it's in kegg_meta
Hi! Do you have any examples of reactions with cofactors? I was not able to find any
Hi! Do you have any examples of reactions with cofactors? I was not able to find any
Reaction with kinlaw_id 44
The way frontend is queried is by searching based on the substrates and products (as opposed by by kinlaw_id). I searched with the substrates and products from that reaction id, but nothing came up. Any idea why?
The way frontend is queried is by searching based on the substrates and products (as opposed by by kinlaw_id). I searched with the substrates and products from that reaction id, but nothing came up. Any idea why?
Yeah, you were searching for the names contained within ec_meta
, which was parsed from ExPASy. The endpoint /kinlaw_by_name queries names given by sabio-rk
Do you know of any examples of cofactors that can be searched with substrate and product names? I would like to add cofactors to the webpage, but I cant find an example I can test it on.
It's in the last reply. Click the endpoint hyperlink.
thanks! this works
Return more metadata from this endpoint: https://api.datanator.info/reactions/kinlaw_by_name/?substrates=Glucose&products=Glucose&_from=0&size=1000&bound=tight
Metadata we could potentially integrate
Comments(Appears to typically be redundant with cofactors)Potential places to get metadata for each EC number. We only need to use one source. In order of decreasing amount of metadata: