KarrLab / wc_sim

A multi-algorithmic simulator for whole-cell models
MIT License
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Replace normal with single-tailed distribution(s) for initializing non-negative values #57

Open artgoldberg opened 4 years ago

artgoldberg commented 4 years ago
  1. Support distributions other than normal: E.g., for initializing volume and species counts or concentration. Use a single-tailed distribution that does not have negative values, like Gamma.

  2. Don't round() copy numbers in sample_copy_num_from_concentration, which just adds noise to the initial conditions. Rather, let the species_population module round copy numbers as needed for discrete-time integrators.

artgoldberg commented 3 years ago
  1. is done