KarrLab / wc_sim

A multi-algorithmic simulator for whole-cell models
MIT License
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Add Next Reaction Method as alternative to Direct Method for SSA #80

Closed artgoldberg closed 4 years ago

artgoldberg commented 4 years ago

See:

Gibson, M.A. and Bruck, J., 2000. Efficient exact stochastic simulation of chemical systems with many species and many channels. The journal of physical chemistry A, 104(9), pp.1876-1889.

Anderson, D.F., 2007. A modified next reaction method for simulating chemical systems with time dependent propensities and delays. The Journal of chemical physics, 127(21), p.214107.