KarrLab / wc_sim

A multi-algorithmic simulator for whole-cell models
MIT License
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Double-check NRM dependencies analysis #96

Closed artgoldberg closed 3 years ago

artgoldberg commented 4 years ago

NRM uses the dependencies of rate laws on species to determine which rate laws should be updated after a reaction execution updates species populations.

But in WC Lang rate laws can depend indirectly on species through expressions. Ensure that each RL knows all of the species it depends on.

artgoldberg commented 3 years ago

fixed