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KasperSkytte / ampvis2

Tools for visualising microbial community amplicon data
https://kasperskytte.github.io/ampvis2/
GNU General Public License v3.0
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Alpha diversity without singletons #76

Closed GenomicaMicrob closed 4 years ago

GenomicaMicrob commented 4 years ago

Hi, excellent package! I would like that when you run the amp_alphadiv function without singletons, it gives you a figure and not only send you a warning and drops.

KasperSkytte commented 4 years ago

Hi there...

Can you please provide a minimal reproducible example of exactly what you have run, tried, and desired output etc. The function gives a warning if there are no singletons, but continues anyways.

GenomicaMicrob commented 4 years ago

Yes indeed it does the analysis, but maybe I was expecting a nice graph of the results, maybe a violin plot grouping by a metadata value?

KasperSkytte commented 4 years ago

The documentation says it returns a data frame. So there is no issue here, closing.