KasperSkytte mmgenome2 issues

KasperSkytte / mmgenome2

Tools for extracting individual genomes from metagenomes

https://kasperskytte.github.io/mmgenome2

GNU Affero General Public License v3.0

17 stars 5 forks source link

issues

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add UMAP to mmload() but not working

#40 jianshu93 opened 12 months ago
1
Umap instead of tsne as non-linear dimension reduction

#39 jianshu93 opened 2 years ago
1
shiny not supported on M1

#38 jianshu93 closed 2 years ago
1
Running mmstats on big assemblies cause integer overflow

#37 Kirk3gaard opened 3 years ago
0
Development

#36 KasperSkytte closed 3 years ago
0
mmexport to make linux line ends

#35 Kirk3gaard opened 4 years ago
0
Create mm_heatmap.R

#34 Kirk3gaard closed 4 years ago
3
Failed to install it in R4.0

#33 duo-zhao-sdu closed 4 years ago
3
install on mac os, R 3.6.1

#32 Gu2uMo closed 4 years ago
2
mmplot coverage ordination

#31 Kirk3gaard opened 4 years ago
0
Update mmplot_cov_profiles.R

#30 Kirk3gaard closed 4 years ago
1
mmplot coverage heatmap

#29 Kirk3gaard closed 4 years ago
4
add function to plot GC skew

#28 Kirk3gaard opened 5 years ago
3
mmgenome2 installing with R 3.6.0

#27 apoosakkannu closed 5 years ago
3
extract.fastq.for.reassembly.pl: Use of uninitialized value

#26 sarah872 closed 5 years ago
1
mmplot - selection

#25 sarah872 closed 5 years ago
2
mmextract does not work with integers

#24 Kirk3gaard closed 5 years ago
2
mmplot_cov_profiles pass scaffold names to plotly

#23 Kirk3gaard opened 5 years ago
0
mmplot_cov_profiles highlight option

#22 Kirk3gaard closed 4 years ago
1
Can you put a link in the home page about where the data for the example comes from?

#21 btemperton closed 5 years ago
8
mmnetwork with highlight_labels and scaffold_labels = T show labels twice

#20 Kirk3gaard opened 6 years ago
0
specify color range

#19 Kirk3gaard opened 6 years ago
0
mmnetwork breaks when running on big datasets

#18 Kirk3gaard opened 6 years ago
0
mmplot to support color by correlation to a selected contig

#17 Kirk3gaard opened 6 years ago
0
mmplot to support group based labelling

#16 Kirk3gaard closed 6 years ago
3
allow the user to specify the k-mer size in mmload

#15 Kirk3gaard closed 6 years ago
1
run mmload without coverage info

#14 Kirk3gaard closed 6 years ago
1
need a wiki for generating basic input data

#13 Kirk3gaard opened 6 years ago
4
replace aes_string() uses when ggplot3.0 comes live on CRAN

#12 KasperSkytte opened 6 years ago
0
Problems in mmgenome2 with own dataset

#11 khuch123 closed 6 years ago
7
fix numeric scales to only be for GC content

#10 KasperSkytte closed 6 years ago
0
New Installing problems with R 3.5.1

#9 chenziwu5 closed 6 years ago
2
mmplot_cov_profiles

#8 Kirk3gaard opened 6 years ago
0
mmplot_cov_profiles to include a legend option

#7 Kirk3gaard closed 4 years ago
2
mmplot_cov_profiles to include scaffold labels

#6 Kirk3gaard closed 6 years ago
2
mmplot labels to have repel option

#5 Kirk3gaard closed 6 years ago
1
mmplot and mmnetwork option to color links based on number of connections

#4 Kirk3gaard opened 6 years ago
2
Installing `mmgenome2` with R 3.5.0

#3 KasperSkytte closed 6 years ago
0
mmplot to support label colors

#2 Kirk3gaard opened 6 years ago
0
mmplot highlight_color setting to accept a vector?

#1 Kirk3gaard opened 6 years ago
0