LLMs to execute Bioinformatics workflows, esp. RNA-seq
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Implement an RNA-Sequence Analysis Workflow using DESEQ2. Open a new pull request on a separate branch and comment the PR number here when you're done #2
Implement RNA-Sequence Analysis Workflow as per the following steps.
Quality assess and clean raw sequencing data
Align reads to a reference
Count the number of reads assigned to each contig/gene
Extract counts and store in a matrix
Create column metadata table
Analyze count data using DESEQ2
Please write and execute the code to do DESEQ2 analysis on the data. If you generate results, please push them to github and mention that in your pull request.
Make sure you execute the code, and if it fails keep re-trying with improvements until you get something useful to share.
Implement RNA-Sequence Analysis Workflow as per the following steps.
Please write and execute the code to do DESEQ2 analysis on the data. If you generate results, please push them to github and mention that in your pull request. Make sure you execute the code, and if it fails keep re-trying with improvements until you get something useful to share.