search

KastanDay / ML4Bio-v2

LLMs to execute Bioinformatics workflows, esp. RNA-seq
MIT License
0 stars 0 forks source link

Implement an RNA-Sequence Analysis Workflow using DESEQ2. Open a new pull request on a separate branch and comment the PR number here when you're done #5

Open KastanDay opened 2 weeks ago

KastanDay commented 2 weeks ago

Implement RNA-Sequence Analysis Workflow as per the following steps.

Analyze count data using DESEQ2 Please write and execute the code to do DESEQ2 analysis on the data. If you generate results, please push them to github and mention that in your pull request. Make sure you execute the code, and if it fails keep re-trying with improvements until you get something useful to share.

lil-jr-dev[bot] commented 2 weeks ago

Thanks for opening a new issue! I'll now try to finish this implementation and open a PR for you to review.

You can monitor the LangSmith trace here.

Feel free to comment in this thread to give me additional instructions, or I'll tag you in a comment if I get stuck. If I think I'm successful I'll 'request your review' on the resulting PR. Just watch for emails while I work.

lil-jr-dev[bot] commented 2 weeks ago

👉 Follow the bot's progress in real time on LangSmith.

lil-jr-dev[bot] commented 2 weeks ago

Error in handle_issue_opened: 'NoneType' object is not subscriptable Traceback

Traceback (most recent call last):
  File "/app/ai_ta_backend/agents/github_webhook_handlers.py", line 169, in handle_issue_opened
    ray.get(post_comment.remote(issue_or_pr=issue, text=str(result['output']), time_delay_s=0))
TypeError: 'NoneType' object is not subscriptable