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KastanDay / ML4Bio

LLMs to execute Bioinformatics workflows, esp. RNA-seq
MIT License
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Create the workflow for RNA-Seq on PBMC Samples. #1

Open rohan-uiuc opened 9 months ago

rohan-uiuc commented 9 months ago

Experiment Type: RNA-Seq Sequencing of total cellular RNA

Workflow Management: Bash/SLURM Scripting and job scheduling

Software Stack: FastQC MultiQC STAR RSEM samtools DESeq2

What else to know about the pipeline? I am working PBMC samples collected from patients that are undergoing immunotherapy.

lil-jr-dev[bot] commented 7 months ago

I have created a new pull request implementing the Transformer Decoder. You can view it here.

lil-jr-dev[bot] commented 7 months ago

I opened a PR for you to review here #34

lil-jr-dev[bot] commented 6 months ago

The changes have been implemented and a pull request has been opened. The PR number is 44.

lil-jr-dev[bot] commented 5 months ago

I have created a new pull request for the RNA-Sequencing on PBMC sampling. You can view it here.