This pull request includes a series of bash and R scripts to create a full command line executable workflow for RNA-Seq analysis on PBMC samples. The workflow includes steps for quality control with FastQC and MultiQC, alignment with STAR, quantification with RSEM, processing with samtools, and differential expression analysis with DESeq2.
Please review the scripts and provide feedback or request any additional changes that may be necessary. Closes #
This pull request includes a series of bash and R scripts to create a full command line executable workflow for RNA-Seq analysis on PBMC samples. The workflow includes steps for quality control with FastQC and MultiQC, alignment with STAR, quantification with RSEM, processing with samtools, and differential expression analysis with DESeq2.
Please review the scripts and provide feedback or request any additional changes that may be necessary. Closes #