LLMs to execute Bioinformatics workflows, esp. RNA-seq
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Create a full command line executable workflow for RNA-Seq on PBMC Samples. Open a new pull request (on a separate branch) and comment the PR number here when you're done #46
Experiment Type: RNA-Seq Sequencing of total cellular RNA
Workflow Management: Workflow Management: Bash/SLURM Scripting and job scheduling
Software Stack: FastQC MultiQC STAR RSEM samtools DESeq2
What else to know about the pipeline? I am working PBMC samples collected from patients that are undergoing immunotherapy.
Use the data files existing in Report_WholeBrain as input for this workflow.
You should write a series of bash scripts and R scripts that can accomplish this task. Open a PR with those scripts when you're done.