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Kennedy-Lab-UW / Duplex-Seq-Pipeline

A standalone end-to-end data analysis pipeline for Duplex Sequencing
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Add adapter clipping #71

Closed bkohrn closed 4 years ago

bkohrn commented 4 years ago

Add new rule to Snakefile for adapter clipping between consensus making and alignment Add cutadapt to main environment Add default adapter to config file defaults