This fixes commit "Support CASAVA >= 1.8 FastQ headers" (d6729cd). The
whole read name must not be used since the end will vary between reads
in a pair. Instead, use the common part before the first space.
The bug manifested as a "paired reads have different names" error from
bwa.
tsibley
commented
9 years ago
This fixes commit "Support CASAVA >= 1.8 FastQ headers" (d6729cd). The whole read name must not be used since the end will vary between reads in a pair. Instead, use the common part before the first space.
The bug manifested as a "paired reads have different names" error from bwa.