KennethEnevoldsen / snip

A utility package handling Single Nucleotide polymorphism data in Python
https://kennethenevoldsen.github.io/snip/
MIT License
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:arrow_up: Update zarr requirement from >=2.11.0,<2.12.0 to >=2.11.0,<2.13.0 #20

Closed dependabot[bot] closed 2 years ago

dependabot[bot] commented 2 years ago

Updates the requirements on zarr to permit the latest version.

Release notes

Sourced from zarr's releases.

v2.12.0

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-12-0.

Changelog

Sourced from zarr's changelog.

2.12.0

Enhancements


* **Add support for reading and writing Zarr V3.** The new `zarr._store.v3`
  package has the necessary classes and functions for evaluating Zarr V3.
  Since the format is not yet finalized, the classes and functions are not
  automatically imported into the regular `zarr` name space. Setting the
  `ZARR_V3_EXPERIMENTAL_API` environment variable will activate them.
  By :user:`Greggory Lee <grlee77>`; :issue:`898`, :issue:`1006`, and :issue:`1007`
  as well as by :user:`Josh Moore <joshmoore>` :issue:`1032`.
  • Create FSStore from an existing fsspec filesystem. If you have created an fsspec filesystem outside of Zarr, you can now pass it as a keyword argument to FSStore. By :user:Ryan Abernathey &lt;rabernat&gt;; :issue:911.

  • Add numpy encoder class for json.dumps By :user:Eric Prestat &lt;ericpre&gt;; :issue:933.

  • Appending performance improvement to Zarr arrays, e.g., when writing to S3. By :user:hailiangzhang &lt;hailiangzhang&gt;; :issue:1014.

  • Add number encoder for json.dumps to support numpy integers in chunks arguments. By :user:Eric Prestat &lt;ericpre&gt; :issue:697.

Bug fixes


* Fix bug that made it impossible to create an ``FSStore`` on unlistable filesystems
  (e.g. some HTTP servers).
  By :user:`Ryan Abernathey &lt;rabernat&gt;`; :issue:`993`.

Documentation
</code></pre>
<ul>
<li>Update resize doc to clarify surprising behavior.
By :user:<code>hailiangzhang &lt;hailiangzhang&gt;</code>; :issue:<code>1022</code>.</li>
</ul>
<p>Maintenance</p>
<pre><code>
* Added Pre-commit configuration, incl. Yaml Check.
  By :user:`Shivank Chaudhary &lt;Alt-Shivam&gt;`; :issue:`1015`, :issue:`1016`.

* Fix URL to renamed file in Blosc repo.
  By :user:`Andrew Thomas &lt;amcnicho&gt;` :issue:`1028`.
&lt;/tr&gt;&lt;/table&gt; 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>

<ul>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/480136c8a580123d3f7b44cf52692221401b8fea"><code>480136c</code></a> 2.12.0 changelog (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1038">#1038</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/a78129cccd9ffbad3a0ab4ea6be2bd26e0401760"><code>a78129c</code></a> Bump setuptools-scm from 6.4.2 to 7.0.1 (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1049">#1049</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/28fddfa0e25ce09acda1717b85b0c0a24031bc07"><code>28fddfa</code></a> Bump redis from 4.3.1 to 4.3.3 (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1043">#1043</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/9bc4f652e09df99f8a6586a2ed21315fdabee10c"><code>9bc4f65</code></a> Replace Build Status badge with Linux testing. (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1047">#1047</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/761bbedb8b500bb7668d8fde3dbcec5e60c72f53"><code>761bbed</code></a> Bump h5py from 3.6.0 to 3.7.0 (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1036">#1036</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/5cdb20229b2783c8b47f3b4a738dcd9d16a7c5b5"><code>5cdb202</code></a> Move <code>master</code> to <code>main</code> (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1033">#1033</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/fd979fbda3cf52dc79c3b1e49a8da0a75b03078d"><code>fd979fb</code></a> Bump numpy from 1.22.3 to 1.22.4 (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1034">#1034</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/b529b0c1858a017e494d20c015086309e0a31e45"><code>b529b0c</code></a> Fix a2 release notes</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/2032a20440b9026942f8f0b1765dcb1ae31630d6"><code>2032a20</code></a> 2.12.0a2 release notes</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/d5a081c6cc4645e2206b763cc1116ff2e6178603"><code>d5a081c</code></a> Mark V3 API experimental (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1032">#1032</a>)</li>
<li>Additional commits viewable in <a href="https://github.com/zarr-developers/zarr-python/compare/v2.11.0...v2.12.0">compare view</a></li>
</ul>
</details>

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dependabot[bot] commented 2 years ago

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.