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KennethEnevoldsen / snip

A utility package handling Single Nucleotide polymorphism data in Python
https://kennethenevoldsen.github.io/snip/
MIT License
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Consult snp embedding #62

Open Cherished-l opened 1 year ago

Cherished-l commented 1 year ago

Hi, my current simple considerations are: After performing plink quality control on the data, extract SNPs (or use known disease-related SNPs) based on disease-related genes, and then use SNPs for feature extraction to achieve disease classification But I don't know how to extract snp features, I found your github, can you tell me how to use the data after quality control to apply your embedding

KennethEnevoldsen commented 1 year ago

I am sorry this is not a community-maintained repo (it is mainly intended for personal use). It might end up being that after we have finished the tests and written a paper on it, but currently it is not.

Cherished-l commented 1 year ago

thank you very much Can you give me some advice on how to embedding the snp, I want to send it into the neural network for training (I only pick the snp combinations that I am interested in)