KennethEnevoldsen snp-compression issues

KennethEnevoldsen / snp-compression

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Finalize SNPNet (todolist from meeting with doug) - see snpnet project

#22 KennethEnevoldsen opened 2 years ago
0
SNPNet finalize

#21 KennethEnevoldsen closed 2 years ago
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Grid search on activation function

#20 KennethEnevoldsen opened 2 years ago
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Does a model trained on chr. 6 generalise to other chromosomes?

#19 KennethEnevoldsen opened 2 years ago
0
combine Wandb config with Pytorch config

#18 KennethEnevoldsen closed 2 years ago
1
transition away from changing thing in the script

#17 KennethEnevoldsen closed 2 years ago
2
run performance test on limited set

#16 KennethEnevoldsen opened 2 years ago
0
prepare presentation of conv. autoencoder

#15 KennethEnevoldsen opened 2 years ago
1
refactor to one training script with a function for building the neural network

#14 KennethEnevoldsen closed 2 years ago
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reduce validation to 10 k

#13 KennethEnevoldsen closed 2 years ago
0
Price of GPUs (scaling and type)

#12 KennethEnevoldsen closed 2 years ago
3
deal with NAs properly

#11 KennethEnevoldsen opened 2 years ago
1
Add Metric: Dosage

#10 KennethEnevoldsen opened 2 years ago
1
Add metric: correlation with correct

#9 KennethEnevoldsen opened 2 years ago
2
Improve speed

#8 KennethEnevoldsen opened 2 years ago
0
decoder size

#7 KennethEnevoldsen closed 2 years ago
2
fix GPU utilisation

#6 KennethEnevoldsen closed 2 years ago
0
Test out alternative input formats

#5 KennethEnevoldsen opened 3 years ago
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setup sweep

#4 KennethEnevoldsen opened 3 years ago
0
Train initial model

#3 KennethEnevoldsen closed 2 years ago
0
Add speed test on plink -> tensor

#2 KennethEnevoldsen closed 2 years ago
0
Add metrics

#1 KennethEnevoldsen closed 3 years ago
0