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KennthShang / CHERRY_MAGs

MAG version of CHERRY
GNU General Public License v3.0
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Predict all potential bacterial hosts of phage #2

Open liangjinsong opened 11 months ago

liangjinsong commented 11 months ago

Hi, I run this pipeline on my own phage genomes and bacterial genomes to predict interactions between them. Based on the output, it seems that only one bacterial host is predicted for each phage genome. I wonder that how to predict all potential bacterial hosts of phage based on ones own phage and bacterial genomes using this pipeline? Thank you in advance!

KennthShang commented 11 months ago

Hi,

I am sorry that the current pipeline is only designed for one-to-one prediction due to the database provided by the NCBI RefSeq. We are still working on the multi-host prediction. As an alternative version, we provide a method to infer the host range using the CRISPRs information only. Please try: https://github.com/KennthShang/CHERRY_crispr_multihost

Best, Jiayu