Dependency issue with mamba/conda installation

[sulmanm1]

Thank you for this great tool. I have used it a few times over the past year, but encountered an issue with installation. After following the instructions, testing the program leads to the following error

Traceback (most recent call last): File "/home/biolinux/phage_programs/PhaBOX/main.py", line 33, in from scripts.data import load_data, preprocess_features, preprocess_adj, sample_mask File "/home/biolinux/phage_programs/PhaBOX/scripts/data.py", line 5, in from scipy.sparse.linalg.eigen.arpack import eigsh ModuleNotFoundError: No module named 'scipy.sparse.linalg.eigen.arpack'; 'scipy.sparse.linalg.eigen' is not a package

Help would be appreciated. I could not resolve this by installing different versions of scipy, as there were dependency conflicts.

[KennthShang]

Thanks for reporting the problem. We set a release to fix this installation problem. Please check the release to download the beta version codes. In this version, we updated the package names used in PhaBOX so it can be run correctly.

Or the link below:

https://github.com/KennthShang/PhaBOX/releases/tag/v0.1.0-beta

Best, Jiayu

[sulmanm1]

Thank you! I will give it a try.