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KennthShang / PhaGCN2.0

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output taxonomy full path? #12

Closed wfgui closed 8 hours ago

wfgui commented 4 weeks ago

Hi Thank you for creating the software, could you consider adding taxonomy's full path to the result?

contig_name idx prediction
NODE_106    0_0 Deejayvirinae
NODE_108    0_1 Salasmaviridae_like
NODE_110    0_2 Casadabanvirus
yuanwenguang666 commented 3 weeks ago

Dear

I'm sorry, I don't understand your advice. Do you mean to add a specific ICTV virus sequences PATH which is in association with test sequence?

wfgui commented 3 weeks ago

Dear

I'm sorry, I don't understand your advice. Do you mean to add a specific ICTV virus sequences PATH which is in association with test sequence?

That mean format the output at taxonomy, such as converting it to k; p; c; o; f; g; s__.

yuanwenguang666 commented 3 weeks ago

Thanks for your advice that I understand your mean. It is better to output a complete classification path from kingdom to family. We will consider adding it to the new update.

yuanwenguang666 commented 4 days ago

Thanks for your advice. The complete classification path can be output to the classification result in the updated version.