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KevinMenden / scaden

Deep Learning based cell composition analysis with Scaden.
https://scaden.readthedocs.io
MIT License
71 stars 25 forks source link

execuse,I encounter some data issues #102

Closed solitudetuzi closed 1 year ago

solitudetuzi commented 2 years ago

I'm learning to use scaden，and I ran into some difficulties running programs and reference papers, and I couldn't find some of the prediction data （samples.txt）and their lable.txt. with regard to pancreatic cell data, I found the pancreas.h5ad file and the xin_bulk_labels.txt (I don't know if the true mark of the predicted data found is correct), but I didn't find the input file for the prediction### xin_bulk_labels.txt , which is the xin_bulk_samples.txt file. I have send you an email. I am so sorry for interrupt you,and want to learn Scaden. without your help,I can not continue my study.

KevinMenden commented 2 years ago

Hi,

I'm not sure I understand fully what your goal is or what you need exactly. The Pancreas datasets are all scRNA-seq datasets, and for the bulk labels, those are just the fractions of cell types per samples. As bulk you have to use the merged cells for the different samples in this case.

Best, Kevin