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KevinMenden / scaden

Deep Learning based cell composition analysis with Scaden.
https://scaden.readthedocs.io
MIT License
71 stars 25 forks source link

Bump conda #86

Closed khkk378 closed 1 year ago

khkk378 commented 3 years ago

Hi! Would you consider bumping the bioconda package? It doesn't really fit the documentation anymore. Thanks!

Cheers, Rasmus

KevinMenden commented 3 years ago

hi @khkk378 ,

do you need the bioconda package, or can you use pip instead? (can still install inside a conda environment) There are some issues with the bioconda recipe that I could not solve. I have mentioned this in the documention somewhere. Probably I should remove the mention of bioconda altogether for now...

Maybe it's time I gave it another try....

khkk378 commented 3 years ago

Conda is so convenient, so it you can get it to work it would be welcome :) Otherwise I think drop it, because it's confusing as is now when the documentation doesn't match the functionality. I tried installing with pip, but for some reason it started to download every single version of numpy. I will use conda and for your dependencies and then just install scaden with pip.