KidneyRegeneration / DevKidCC

Package to classify kidney cells within single cell RNA sequencing data
MIT License
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Trouble installing DevKidCC #1

Open DavidB-XI opened 2 years ago

DavidB-XI commented 2 years ago

Hi Sean,

Great idea here to measure cell types at more granular levels, especially on mature and developing kidneys.

My main trouble is in installing DevKidCC in R using:

devtools::install_github("KidneyRegeneration/DevKidCC@main") Downloading GitHub repo KidneyRegeneration/DevKidCC@main Error in utils::download.file(url, path, method = method, quiet = quiet, : download from 'https://api.github.com/repos/KidneyRegeneration/DevKidCC/tarball/main' failed

devtools::install_github("KidneyRegeneration/DevKidCC", ref = "main") Downloading GitHub repo KidneyRegeneration/DevKidCC@main Error in utils::download.file(url, path, method = method, quiet = quiet, : download from 'https://api.github.com/repos/KidneyRegeneration/DevKidCC/tarball/main' failed

Wondering if you could help to get this working?

DavidB-XI commented 2 years ago

It may require a simple closing of my R - see here: https://github.com/jmonlong/sveval/issues/15

I will check this soon...!

Edit 1

It seems I am still having difficulties installing DevKidCC

DavidB-XI commented 2 years ago

I have realised the issue - the files in ./data are prohibitively large

on machines with fast internet, the install works on machines with slow internet, the install takes time and likely cuts out

I recommend looking at a way to accomodate for different internet connections - it may go a long way to increasing the utility of this package ... 👍