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KineticPreProcessor / KPP

The KPP kinetic preprocessor is a software tool that assists the computer simulation of chemical kinetic systems
GNU General Public License v3.0
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Fatal error : kppfile.tmp: Can't read file #108

Open lmc5474 opened 3 months ago

lmc5474 commented 3 months ago

Bug Report Description When using the example provided with kpp for testing, running cd example followed by the kpp ros.kpp command results in the error Fatal error: kppfile.tmp: Can't read file. This error is caused by the missing kppfile.tmp file. Creating a new kppfile.tmp file in the folder allows the command to run, but the result is incorrect. For example, the generated small_strato_Integrator.f90 file does not contain any code.

Steps to Reproduce Steps to reproduce the behavior:

Clone or download the kpp repository. Navigate to the example directory: cd example. Run the command: kpp ros.kpp. Observe the error message: Fatal error: kppfile.tmp: Can't read file. Expected Behavior kpp should run normally and generate the correct output files.

Actual Behavior The missing kppfile.tmp file causes an error. Creating a new kppfile.tmp file in the folder allows kpp to run, but the generated small_strato_Integrator.f90 file does not contain any code, resulting in an incorrect output.

Screenshots image

Environment

Operating System:Centos7 kpp Version: 3.1.1 Additional Information Creating a new kppfile.tmp file allows kpp to run, but the generated small_strato_Integrator.f90 file does not contain any code, resulting in incorrect output.

yantosca commented 3 months ago

Thanks for writing @lmc5474. I did the same steps on an Ubuntu instance but I didn't run into this problem.

[EAS-RYANTOSCA2A examples]$ cd ../src
[EAS-RYANTOSCA2A src]$ make distclean
[EAS-RYANTOSCA2A src]$ make
gcc -g -Wall -Wno-unused-function -I/usr/include -c code.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c code_c.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c code_f77.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c code_f90.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c code_matlab.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c debug.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c gen.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c kpp.c
flex -olex.yy.c scan.l
gcc -g -Wall -Wno-unused-function -I/usr/include -c lex.yy.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c scanner.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c scanutil.c
gcc -g -Wall -Wno-unused-function -I/usr/include -c y.tab.c
gcc -g -Wall -Wno-unused-function code.o code_c.o code_f77.o code_f90.o code_matlab.o debug.o gen.o kpp.o lex.yy.o scanner.o scanutil.o y.tab.o -L/usr/lib/x86_64-linux-gnu -lfl -o kpp
[EAS-RYANTOSCA2A src]$ cd ../examples/
[EAS-RYANTOSCA2A examples]$ kpp ros.kpp

This is KPP-3.1.1.

KPP is parsing the equation file.
KPP is computing Jacobian sparsity structure.
KPP is starting the code generation.
KPP is initializing the code generation.
KPP is generating the monitor data:
    - ros_Monitor
KPP is generating the utility data:
    - ros_Util
KPP is generating the global declarations:
    - ros_Main
KPP is generating the ODE function:
    - ros_Function
KPP is generating the ODE Jacobian:
    - ros_Jacobian
    - ros_JacobianSP
KPP is generating the linear algebra routines:
    - ros_LinearAlgebra
KPP is generating the Hessian:
    - ros_Hessian
    - ros_HessianSP
KPP is generating the utility functions:
    - ros_Util
KPP is generating the rate laws:
    - ros_Rates
KPP is generating the parameters:
    - ros_Parameters
KPP is generating the global data:
    - ros_Global
    - ros_Global
KPP is generating the stoichiometric description files:
    - ros_Stoichiom
    - ros_StoichiomSP
KPP is generating the driver from general.f90:
    - ros_Main
KPP is starting the code post-processing.

KPP has successfully created the model "ros".

[EAS-RYANTOSCA2A examples]$
[EAS-RYANTOSCA2A examples]$  ./ros.exe
   0.0%. T=0.432E+05  O1D= 0.9906E+02; O= 0.6624E+09; O3= 0.5326E+12; NO= 0.8725E+09; NO2= 0.2240E+09; O2= 0.1697E+17;
   0.3%. T=0.441E+05  O1D= 0.9965E+02; O= 0.6715E+09; O3= 0.5377E+12; NO= 0.9433E+09; NO2= 0.1532E+09; O2= 0.1697E+17;
   0.7%. T=0.450E+05  O1D= 0.1006E+03; O= 0.6776E+09; O3= 0.5427E+12; NO= 0.9425E+09; NO2= 0.1540E+09; O2= 0.1697E+17;
   1.0%. T=0.459E+05  O1D= 0.1015E+03; O= 0.6836E+09; O3= 0.5477E+12; NO= 0.9417E+09; NO2= 0.1548E+09; O2= 0.1697E+17;
   1.4%. T=0.468E+05  O1D= 0.1023E+03; O= 0.6890E+09; O3= 0.5526E+12; NO= 0.9409E+09; NO2= 0.1556E+09; O2= 0.1697E+17;
   1.7%. T=0.477E+05  O1D= 0.1029E+03; O= 0.6937E+09; O3= 0.5575E+12; NO= 0.9399E+09; NO2= 0.1566E+09; O2= 0.1697E+17;
   2.1%. T=0.486E+05  O1D= 0.1034E+03; O= 0.6973E+09; O3= 0.5623E+12; NO= 0.9389E+09; NO2= 0.1576E+09; O2= 0.1697E+17;
   2.4%. T=0.495E+05  O1D= 0.1035E+03; O= 0.6991E+09; O3= 0.5669E+12; NO= 0.9376E+09; NO2= 0.1589E+09; O2= 0.1697E+17;
   2.8%. T=0.504E+05  O1D= 0.1033E+03; O= 0.6987E+09; O3= 0.5715E+12; NO= 0.9360E+09; NO2= 0.1605E+09; O2= 0.1697E+17;
   3.1%. T=0.513E+05  O1D= 0.1025E+03; O= 0.6953E+09; O3= 0.5759E+12; NO= 0.9341E+09; NO2= 0.1624E+09; O2= 0.1697E+17;
   3.5%. T=0.522E+05  O1D= 0.1011E+03; O= 0.6883E+09; O3= 0.5800E+12; NO= 0.9317E+09; NO2= 0.1648E+09; O2= 0.1697E+17;
   3.8%. T=0.531E+05  O1D= 0.9892E+02; O= 0.6768E+09; O3= 0.5839E+12; NO= 0.9286E+09; NO2= 0.1679E+09; O2= 0.1697E+17;
   4.2%. T=0.540E+05  O1D= 0.9583E+02; O= 0.6602E+09; O3= 0.5875E+12; NO= 0.9248E+09; NO2= 0.1717E+09; O2= 0.1697E+17;
...
  97.9%. T=0.297E+06  O1D= 0.1370E+03; O= 0.9213E+09; O3= 0.7451E+12; NO= 0.9144E+09; NO2= 0.1821E+09; O2= 0.1697E+17;
  98.3%. T=0.298E+06  O1D= 0.1381E+03; O= 0.9278E+09; O3= 0.7479E+12; NO= 0.9145E+09; NO2= 0.1820E+09; O2= 0.1697E+17;
  98.6%. T=0.299E+06  O1D= 0.1389E+03; O= 0.9330E+09; O3= 0.7507E+12; NO= 0.9144E+09; NO2= 0.1821E+09; O2= 0.1697E+17;
  99.0%. T=0.300E+06  O1D= 0.1396E+03; O= 0.9372E+09; O3= 0.7535E+12; NO= 0.9142E+09; NO2= 0.1823E+09; O2= 0.1697E+17;
  99.3%. T=0.301E+06  O1D= 0.1401E+03; O= 0.9409E+09; O3= 0.7562E+12; NO= 0.9139E+09; NO2= 0.1826E+09; O2= 0.1697E+17;
  99.7%. T=0.302E+06  O1D= 0.1406E+03; O= 0.9443E+09; O3= 0.7589E+12; NO= 0.9136E+09; NO2= 0.1829E+09; O2= 0.1697E+17;
 100.0%. T=0.302E+06  O1D= 0.1411E+03; O= 0.9476E+09; O3= 0.7616E+12; NO= 0.9133E+09; NO2= 0.1832E+09; O2= 0.1697E+17;
[EAS-RYANTOSCA2A examples]$

My compiler is:

[EAS-RYANTOSCA2A examples]$ gcc --version
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
Copyright (C) 2021 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Which compiler version were you using?

RolfSander commented 3 months ago

I've seen this error message before on a virtual machine which did not have enough memory (RAM). I suggest to increase the memory of the VM and try again.