Open pollend opened 4 years ago
Hi, currently, GetOrganelle does not support 3rd generation sequencing (-s
is for single end illumina). I would let you know once we make it.
BTW, data should be connected with comma like -1 ./HA1_DSW64714-V_HT2GMCCXY_L4_1.fq.gz,./HA1_DSW64714-V_HT2GMCCXY_L5_1.fq.gz,./HA1_DSW64714-V_HT2GMCCXY_L6_1.fq.gz,./HA1_DSW64714-V_HT2GMCCXY_L7_1.fq.gz
, otherwise, the latter 3 files would not be used.
I we're trying to assemble the sequences using pacbio data and I've ran this twice; one with the short reads and another will the pacbio reads.
without short reads:
with short reads: