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Kinggerm / GetOrganelle

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
GNU General Public License v3.0
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Extended SPAdes was created for low quality sequence read instead complete assembly #341

Open timurrxxcd opened 3 months ago

timurrxxcd commented 3 months ago

@JianjunJin I encountered similar issue while assembling cp genome, but it's not because if version of SPAdes or python. I got only extended_1_paired.fq, extended_2_paired.fq, extended_1_unpaired.fq, extended_2_unpaired.fq files as result. I think it maybe due to sequencing (632 MB and 670 MB forward and reverse reads) process. do you think it is impossible to assemble it? here are log files: spades.log slim.log.txt image

JianjunJin commented 3 months ago

Please attach the complete get_org.log.txt file

timurrxxcd commented 3 months ago

here is it: get_org.log.txt