How to specify database path while running?

Kinggerm / GetOrganelle

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

GNU General Public License v3.0

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How to specify database path while running? #76

Open TypicalSEE opened 3 years ago

TypicalSEE commented 3 years ago

Hi there. Due to disk quota (a couple of megabytes) of home dir, I installed database in a non-home dir. But I can't find any options in the main script "get_organelle_from_reads.py" which specifies database path. Thanks ~

Kinggerm commented 3 years ago

It can be assigned by using the command line parameter --config-dir for a "get_organelle_from*.py" single run, or by using the shell environment variable GETORG_PATH for the entire running environment.

You can find a brief introduction at Home page#Initialization or a detailed introduction at Initialization#default-directory.