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Kingsford-Group / bloomtree

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Unexpected output in test case (try 2) #10

Closed droe-nmdp closed 8 years ago

droe-nmdp commented 8 years ago

Attached is a simple test via script. It creates a tree and then runs two queries. I only expect one to hit, but they both return the same answer. Can you tell me what I'm doing incorrectly? test3.txt

Bradsol commented 8 years ago

The answer here is actually quite simple but took me a bit to figure out - the fake fasta you are building is not formatted correctly. What you want is:

seq ATATAT....

What you wrote was

seq ATATAT....

If you change the second line to 'echo -e ">seq \n ATATATATATATATATATAT" > insequence2.txt', your test set works for me.

droe-nmdp commented 8 years ago

Thank you! Sorry for the inconvenience.

On 8/24/16, 9:25 AM, "Bradsol" notifications@github.com<mailto:notifications@github.com> wrote:

The answer here is actually quite simple but took me a bit to figure out - the fake fasta you are building is not formatted correctly. What you want is:

seq ATATAT....

What you wrote was

seq ATATAT....

If you change the second line to 'echo -e ">seq \n ATATATATATATATATATAT" > insequence2.txt', your test set works for me.

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