Long-read data - Githubissues

Kingsford-Group / squid

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

BSD 3-Clause "New" or "Revised" License

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Open OxPen opened 6 years ago

OxPen commented 6 years ago

Hi,

Stupid question from rookie; Is this working for long read data, like Oxford Nanopore?

Thank you!

Peny

Congm12 commented 6 years ago

The current implementation is only for short reads. But we are planning to extend to long read data.