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Kingsford-Group / squid

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
BSD 3-Clause "New" or "Revised" License
40 stars 22 forks source link

Bioconda package? #12

Open apeltzer opened 6 years ago

apeltzer commented 6 years ago

Hi, did you have a look at making a Bioconda package for this? Would make installation easy and you will get automatically a Docker container for the tool resolving for example this issue here: #11

https://bioconda.github.io/

https://gitter.im/bioconda/Lobby

csijcs commented 6 years ago

Agreed. I'm having issues installing. Get's hung up here: cd bamtools mkdir build cd build cmake ..

cmake: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by cmake)
cmake: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by cmake)
cmake: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by cmake)
cmake: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by cmake)

Any help would be much appreciated

Congm12 commented 6 years ago

Thanks for the suggestions. We are currently working on building either a conda package or a docker image.

apeltzer commented 6 years ago

Build conda and you get both ;-)