Can I use squid tool for scRNA-seq data?

Kingsford-Group / squid

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

BSD 3-Clause "New" or "Revised" License

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Can I use squid tool for scRNA-seq data? #25

Open levinhein opened 3 years ago

levinhein commented 3 years ago

Hello. I have a scRNA-seq seurat object gene expression matrix (rows: genes, columns: cells). May I ask if I can use squid tool for scRNA-seq data? If yes, what would be the input data and do you have an example/vignette? Thank you!