refactor: impl `ReferenceSerialization`

[KKould]

What problem does this PR solve?

ReferenceSerialization is used to unify meta-information such as ColumnRef to avoid possible inconsistencies caused by direct serialization after deserialization.

Code changes

• [x] Has Rust code change
• [ ] Has CI related scripts change

Check List

Tests

• [x] Unit test
• [ ] Integration test
• [ ] Manual test (add detailed scripts or steps below)
• [ ] No code

Side effects

• [ ] Performance regression: Consumes more CPU
• [ ] Performance regression: Consumes more Memory
• [ ] Breaking backward compatibility

Note for reviewer