PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
when i run the Prawns i get these error frequently and even in runing test sample
./kmer_pair_grouping.o 2 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25 [Errno 2] No such file or directory: './kmer_pair_grouping.o'
./kmer_pair_grouping.o 0 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25 [Errno 2] No such file or directory: './kmer_pair_grouping.o'
./kmer_pair_grouping.o 4 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25./kmer_pair_grouping.o 1 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25 [Errno 2] No such file or directory: './kmer_pair_grouping.o'[Errno 2] No such file or directory: './kmer_pair_grouping.o'
TIME taken to generate grouped kmer pairs per partition: 0.05226325988769531
TIME taken to merge kmer pairs to form blocks: 0.016164302825927734
Traceback (most recent call last):
File "/lustre/ajay.bhatia/rounak/new_pangenome/PRAWNS/run_prawns.py", line 726, in
hash_partitions = np.arange(0, len(hash_strings), part_size)
ZeroDivisionError: float division by zero
when i run the Prawns i get these error frequently and even in runing test sample
./kmer_pair_grouping.o 2 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25 [Errno 2] No such file or directory: './kmer_pair_grouping.o' ./kmer_pair_grouping.o 0 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25 [Errno 2] No such file or directory: './kmer_pair_grouping.o' ./kmer_pair_grouping.o 4 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25./kmer_pair_grouping.o 1 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25 [Errno 2] No such file or directory: './kmer_pair_grouping.o'[Errno 2] No such file or directory: './kmer_pair_grouping.o'
TIME taken to generate grouped kmer pairs per partition: 0.05226325988769531 TIME taken to merge kmer pairs to form blocks: 0.016164302825927734 Traceback (most recent call last): File "/lustre/ajay.bhatia/rounak/new_pangenome/PRAWNS/run_prawns.py", line 726, in
hash_partitions = np.arange(0, len(hash_strings), part_size)
ZeroDivisionError: float division by zero