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KirillKryukov / naf

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
http://kirill-kryukov.com/study/naf/
zlib License
56 stars 6 forks source link

Docker image in kubernetes cluster issue #17

Open karegapauline opened 1 year ago

karegapauline commented 1 year ago

I am trying to use the latest docker image quay.io/biocontainers/naf:1.3.0--hec16e2b_3 to compress and decompress within a nextflow pipeline. I am running the pipeline in a Kubernetes cluster and I keep getting the error: Illegal instruction (core dumped), and terminated with an error exit status (132).

The commands I am running are:

compress

mkdir mytemp ennaf -o GSM461177_1.trimmed.naf --temp-dir mytemp GSM461177_1.fastqsanger

I've also tried to build my own image and this works locally, but throws the same error when run in the cluster. Could you assist.

Thanks

KirillKryukov commented 1 year ago

Sorry, no idea what might be wrong. I don't use Kubernetes, but if you'll figure out a way to reproduce it locally, I'll take a look. Also please post if you'll have any additional related findings or observations.