multiple input files

[only1chunts]

the ability to compress and uncompress more than 1 file at a time would be very useful. e.g.being able to compress all files with suffix .fasta : $ naf ./*.fasta > . Adding an option to keep or remove the old fasta after compression could also be helpful, (default to keep them), and a similar flag for keep or remove .naf version after decompression.

[KirillKryukov]

the ability to compress and uncompress more than 1 file at a time would be very useful. e.g.being able to compress all files with suffix .fasta : $ naf ./*.fasta > .

I agree. This is a planned extension, hopefully to be added soon.

Adding an option to keep or remove the old fasta after compression could also be helpful, (default to keep them), and a similar flag for keep or remove .naf version after decompression.

I'm less thrilled about this one, but it's a relatively small feature, so I will consider it.

Thanks for suggestions.

[KirillKryukov]

I added support for multi-file archives. It works analogously to gzipping a tar file: First the individual FASTA files are combined into a single Multi-Multi-FASTA file, which is then compressed with NAF. See Compressing multiple files section.