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Kkulkarni1 / CAPG

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For allopolyploid whole genome genotyping #1

Open xiekunwhy opened 1 year ago

xiekunwhy commented 1 year ago

Hi,

Can I use CAPG to genotype whole genome instead of some "targeted genomic regions", how to do that if I can?

Best, Kun

Kkulkarni1 commented 1 year ago

Hi Kun,

Thanks for reaching out.

Do you have the whole genome alignments of the two subgenomes?

Is entire genome homoeologous in your case?

Thanks, Roshan

From: xiekunwhy @.> Date: Tuesday, November 15, 2022 at 7:40 PM To: Kkulkarni1/CAPG @.> Cc: Subscribed @.***> Subject: [Kkulkarni1/CAPG] For allopolyploid whole genome genotyping (Issue #1)

Hi,

Can I use CAPG to genotype whole genome instead of some "targeted genomic regions", how to do that if I can?

Best, Kun

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