Open lmuenter opened 4 years ago
Dear @lmuenter this seems to be a problem with conda, not with phangorn. I am not involved with the conda packaging and I am sorry but can't help with it. I like the idea that one has only one way to install lots of packages with conda, but installing packages in R with install.packages("phangorn") is very robust and I never had problems. Regards, Klaus
Hello @KlausVigo Thanks for the info! My problem could be resolved easily (you just need to install openblas). I just wanted to inform you nonetheless. I'm using conda, since other dependencies for my pipeline are available via conda. These dependencies are programs written in various languages. Additionally, I wrote several scripts utilizing phangorn, ggtree and other R-packages. I figured it would be a good way to make everything reproducible by just providing a environment.yml with the pipeline's repository. Best wishes,
Lukas
Hey there, thanks for the package! However, when installing via conda, the dependency openblas is missing. Maybe this can be added?
phangorn install
conda install -c r r-phangorn
The error message:
Error: package or namespace load failed for ‘phangorn’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '~/conda/envs/phangorn_env/lib/R/library/phangorn/libs/phangorn.so': libopenblas.so.0: cannot open shared object file: No such file or directory