KlementineJBS / ELN_USYD_Honours

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Open Source Tuberculosis Twitter Network Analysis #29

Open KlementineJBS opened 3 years ago

KlementineJBS commented 3 years ago

About

This project is looking at the Twitter networks that "talk about tuberculosis" and specifically those which discuss anti-tuberculosis drug discovery. We hope to examine the place of the @OpenSourceTB Twitter account in the anti-tubercular drug discovery community, and to determine ways to improve the account's reach so that it can be used effectively to both disseminate research conducted in the open source drug discovery community and attract new collaborators.

Data Collection Protocol

Data collection began on 20-08-2021 and will be repeated on a weekly basis for an undetermined period.

NodeXL's "Twitter Search Network" function was used to search for a total of 8 terms (see: search settings). The metrics collected for each term were:

NB. An explanation of some of these terms can be found here.

Search settings

List of terms searched:

All terms except "tuberculosis" were searched using the Twitter User Network 01 - standard worksheet option with automated graph metric calculation. The term "tuberculosis" was searched using the Twitter User Network 02 - large worksheet option.

Data was collated in a Google sheet and can be accessed here. (This link allows comments only). Blank columns mean that no data was found for this search term on the date of collection.

KlementineJBS commented 3 years ago

Alteration to search terms

As of the data collected 27-8-21, better understanding of the software's capacity has led to the use of slightly different search terms, as listed below:

The tweets collected were also filtered by language using NodeXL's "lang:en" operator (which corresponds to Twitter's lang paramater - this classifies tweets according to the ISO 639-1 codes.

This reduces the number of search terms, making data collection easier, while still collecting the same data. In addition, it allows us to examine the networks of "drug discovery", "open science" and "open source" more holistically. Many tweets that contain one of these search terms will contain both the separate words and a hashtag, so collecting tweets for each iteration separately was leading to overlapping data.

KlementineJBS commented 3 years ago

Data Cleaning

Tuberculosis AND OpenScience OR Open Science 08-27

REMOVED (off-topic)

"@drgregkelly Many will recall reading about the "Open Air Schooling" movement during Tuberculosis outbreaks & the 1918 Spanish Flu Pandemic.

Even back then people understood venitlation (aka: fresh air) was a powerful tool to reduce viral spread.

Ventilation in Schools = not rocket science!"

(1)

EMPTY

Tuberculosis AND OpenScience OR Open Science 09-10

Unchanged.

Tuberculosis AND DrugDiscovery OR Drug Discovery 08-27

Unchanged.

Tuberculosis AND DrugDiscovery OR Drug Discovery 09-03

REMOVED (overlap with another dataset)

"Delighted to share results from our four year collaboration with @shailjasingh75, @dasgobardhan and Ram from BHU, on the discovery of drug-like molecules that modulate host NAD metabolism and combat Tuberculosis & Malaria infection. Report by @rohanduaTOI. https://t.co/0YvhkwdoAm https://t.co/7KQCuavmwg"

(23)

Tuberculosis AND DrugDiscovery OR Drug Discovery 09-10

REMOVED (overlap with another dataset)

"Delighted to share results from our four year collaboration with @shailjasingh75, @dasgobardhan and Ram from BHU, on the discovery of drug-like molecules that modulate host NAD metabolism and combat Tuberculosis & Malaria infection. Report by @rohanduaTOI. https://t.co/0YvhkwdoAm https://t.co/7KQCuavmwg"

(5)

". @LyonCollege Lyon College (Batesville, Arkansas) students led by Associate Professor of Chemistry Dr. Irosha Nawarathne contribute to drug discovery research for tuberculosis, lung cancer https://t.co/gYuvXF9te5 #NMRchat #NMR #NMRnews https://t.co/QP1CvkRZ3R"

(1)

TB AND DrugDiscovery OR Drug Discovery 08-27

Unchanged.

TB AND DrugDiscovery OR Drug Discovery 09-03

REMOVED (overlap with another dataset)

"Delighted to share results from our four year collaboration with @shailjasingh75, @dasgobardhan and Ram from BHU, on the discovery of drug-like molecules that modulate host NAD metabolism and combat Tuberculosis & Malaria infection. Report by @rohanduaTOI. https://t.co/0YvhkwdoAm https://t.co/7KQCuavmwg"

(23)

TB AND DrugDiscovery OR Drug Discovery 09-10

REMOVED (overlap with another dataset)

"Delighted to share results from our four year collaboration with @shailjasingh75, @dasgobardhan and Ram from BHU, on the discovery of drug-like molecules that modulate host NAD metabolism and combat Tuberculosis & Malaria infection. Report by @rohanduaTOI. https://t.co/0YvhkwdoAm https://t.co/7KQCuavmwg"

(5)

REMOVED (off-topic)

"The drug ivermectin is more than a “horse dewormer.” Its discovery for use in treating parasitic diseases in humans won a Nobel Prize. https://t.co/Y8OL7xPedG"

(1)

KlementineJBS commented 2 years ago

TB AND DrugDiscovery OR Drug Discovery 09-17

REMOVED (overlap with another dataset)

"Delighted to share results from our four year collaboration with @shailjasingh75, @dasgobardhan and Ram from BHU, on the discovery of drug-like molecules that modulate host NAD metabolism and combat Tuberculosis & Malaria infection. Report by @rohanduaTOI. https://t.co/0YvhkwdoAm https://t.co/7KQCuavmwg"

(2)

REMOVED (off-topic)

"The drug ivermectin is more than a “horse dewormer.” Its discovery for use in treating parasitic diseases in humans won a Nobel Prize. https://t.co/Y8OL7xPedG"

(1)

KlementineJBS commented 2 years ago

TB AND OpenScience OR Open Science 08-27

Unchanged.

TB AND OpenScience OR Open Science 09-03

Unchanged.

TB AND OpenScience OR Open Science 09-10

Unchanged.

TB AND OpenScience OR Open Science 09-17

REMOVED (overlap with another dataset)

"The #TB drugs pipeline: "Not a problem of science, problem of resources". An important podcast to listen to: https://t.co/UhnAOEnyTx

@TBAlliance #endTB @StopTBCanada"

(13)

"Save the dates! 13th – 17th September, @PLOS will be hosting Scientists for Open Science, a week-long virtual program bringing together researchers and stakeholders from around the globe to share perspectives on #OpenScience. https://t.co/HBsFTpz1fA"

(3)

TB AND DrugDiscovery OR "Drug Discovery" 09-10

Unchanged.

TB AND DrugDiscovery OR "Drug Discovery" 09-17

Unchanged.

TB AND OpenScience OR "Open Science" 09-10

Unchanged.

TB AND OpenScience OR "Open Science" 09-17

REMOVED (overlap with another dataset)

"Save the dates! 13th – 17th September, @PLOS will be hosting Scientists for Open Science, a week-long virtual program bringing together researchers and stakeholders from around the globe to share perspectives on #OpenScience. https://t.co/HBsFTpz1fA"

(3)

KlementineJBS commented 2 years ago

Tuberculosis AND OpenScience OR Open Science 09-24

Unchanged.

TB AND DrugDiscovery OR Drug Discovery 09-24

REMOVED (overlap with another dataset)

"We have a couple of vacancies in the group working on TB Drug discovery - for a postdoc in med chem, and a research associate in biology.

https://t.co/k2hl7wNEd1

https://t.co/2QfwJfQWbP"

(10)

(empty)

QM - TB AND DrugDiscovery OR "Drug Discovery" 09-24

REMOVED (overlap with another dataset)

"We have a couple of vacancies in the group working on TB Drug discovery - for a postdoc in med chem, and a research associate in biology.

https://t.co/k2hl7wNEd1

https://t.co/2QfwJfQWbP"

(10)

(empty)

TB AND OpenScience OR Open Science 09-24

REMOVED (offtopic)

"Find out more about our BSc Paramedic Science programme at our open day next Saturday.

Register here: https://t.co/arRr54aKyT

Paramedic #AHP #Paramedicscience #university #universityoflincoln @UoL_Paramedics https://t.co/jlwlAhUy2G"

(5)

"@lufcbfb @TrishBrocks @IainTime @domdyer70 @DeborahMeaden @RSPCA_official @LeagueACS The sad part of this is that I'm open to independent science but given DEFRA's refusal to meet with top scientists (ST's) and the rest, intransigence confirms that we must go forward to fight TB as 1'000s killed, still TB Don't appreciated "uneducated" - insult is lost argument!"

(7)

"@TrishBrocks @lufcbfb @IainTime @domdyer70 @DeborahMeaden @RSPCA_official @BadgerTrust Look at science - at the risk of repeating myself, there must now be an independent investigation with modern science and experts scientists. You know, the Sunday Times experts DEFRA refused to meet, yet 1,000s animals still killed. Open mind to debate & stop TB! @BadgerTrust"

(14)

(empty)

QM - TB AND OpenScience OR "Open Science" 09-24

REMOVED (offtopic)

"Congratulations @ak_gillespie!

Everyone can explore the amazing, open, 9.1 TB NWB dataset behind this paper on @DANDIarchive! Sign up for https://t.co/19hb2U0G6J and start analyzing it in the cloud for free.

OpenScience https://t.co/3eLk9U8DyW"

(7)

(empty)

KlementineJBS commented 2 years ago

Tuberculosis AND OpenScience OR Open Science 10-01

Unchanged.

Tuberculosis AND OpenScience OR "Open Science" 10-01

Unchanged.

Tuberculosis AND DrugDiscovery OR Drug Discovery 10-01

Unchanged.

Tuberculosis AND DrugDiscovery OR "Drug Discovery" 10-01

Unchanged.

OpenSourceTB 10-01

Unchanged.

TB AND OpenScience OR Open Science 10-01

REMOVED (offtopic)

"'@TrishBrocks @lufcbfb @IainTime @domdyer70 @DeborahMeaden @RSPCA_official @BadgerTrust Look at science - at the risk of repeating myself, there must now be an independent investigation with modern science and experts scientists. You know, the Sunday Times experts DEFRA refused to meet, yet 1,000s animals still killed. Open mind to debate & stop TB! @BadgerTrust"

(13)

"@lufcbfb @TrishBrocks @IainTime @domdyer70 @DeborahMeaden @RSPCA_official @LeagueACS The sad part of this is that I'm open to independent science but given DEFRA's refusal to meet with top scientists (ST's) and the rest, intransigence confirms that we must go forward to fight TB as 1'000s killed, still TB Don't appreciated "uneducated" - insult is lost argument!"

(8)

"In just under 3 weeks from now, the #UnionConf is going to open its doors to some fantastic new science and empowering community engagement. Registration is open with affordable rates – we hope to see you at our dynamic virtual event from 19-22 Oct https://t.co/5uOIj3LUxl https://t.co/QvHPSkMcFt"

(3)