Klepac-Ceraj-Lab / Resonance

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Vanja figure feedback #132

Closed kescobo closed 1 year ago

kescobo commented 1 year ago

https://vkc-lab.slack.com/archives/C6A0Z4Z8X/p1678734651400349

Figure 1:

Figure 2:

Figure 3:

Figure 4:

kescobo commented 1 year ago

@vanjakle regarding

when in black and white printout, Part G - positive and negative associations are impossible to tell apart.

Positive and negative can be discerned based on where the median of the gene set is relative to the overall median. There isn't a great way to do divergent hue. Instead, I made the non-significant white so that it's a bit easier to tell which ones are significant vs those that aren't.

image

image

Seem good to you?

kescobo commented 1 year ago

@vanjakle re:

Add (RF) next to the first random forest to define the abbr

Do you mean in the text, or in the figure?

kescobo commented 1 year ago

@vanjakle How strongly do you feel about

Color (highlight) taxa in B the same way they are colored in C.

?