issues
search
Klepac-Ceraj-Lab
/
snakemake_workflows
2
stars
1
forks
source link
fix humann2, templates, and kneaddata
#29
Closed
kescobo
closed
5 years ago
kescobo
commented
5 years ago
supercedes #28
Update
humann2
call to use fastq files from
kneaddata
and taxonomic profiles from
metaphlan2
.
update
cluster_template.yaml
to give 12 hours (rather than 12 minutes) to humann2
not part of this PR, but also needed to update Diamond on the cluster to make this work consistently
supercedes #28
humann2call to use fastq files fromkneaddataand taxonomic profiles frommetaphlan2.cluster_template.yamlto give 12 hours (rather than 12 minutes) to humann2