Weekly meeting for 2022-05-02 to 2022-05-24

[denizeu]

What I accomplished last week

N/A

What I plan to do next week

• [x] Accept invite to lab github org
• [x] Schedule ongoing meetings with Kevin / Anika for the summer
• [x] Keep Kevin posted via slack if I run into any trouble
• [x] MetaPhlAn tutorial: https://github.com/biobakery/biobakery/wiki/metaphlan3
• [x] Took notes on key terms: input, output, &visualization, as well as how these are used
• [x] Downloaded files to metaphlan_analysis directory
• [x] Took notes at the steps to make the directory/download the files to directory
• [x] Stuck at running single sample steps due to installation of metaphlan:
• [x] Currently trying to figure out how to install metaphlan: I downloaded minoconda: ''' curl -O https://repo.anaconda.com/miniconda/Miniconda3-py38_4.11.0-MacOSX-arm64.sh Current error: ‘PackagesNotFoundError: The following packages are not available from current channels
  • python=3.7’ ''
• [x] HUMAnN tutorial: https://github.com/biobakery/biobakery/wiki/humann3
• [x] Review introduction to the method
• [x] Wasn’t able to get the correct conda download, will be able to do this once I have the correct programs
• [x] contact Kevin about conda installation issues
• [x] Read eLife paper

Is there anything that Kevin can help with

No response

How did the last week go?

• [X] I accomplished all or most of my goals
• [ ] I used my time wisely
• [ ] I struggled with a problem, but solved it
• [X] I ran into an issue I can't solve on my own

[kescobo]

Make sure that any unfinished TODOs get added to the project tracker, or else are carried forward to the next week before closing this issue.

[kescobo]

Move any remaining todos to the project tracker or to next week's issue, then close this please :-)