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KlugerLab / FIt-SNE

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
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Could not run in Google Colab #110

Open sabotaha opened 3 years ago

sabotaha commented 3 years ago

Hello,

I am trying to run fast_tsne.py in Google Colab due to inadequity of my system. When I tried to run the code I am getting the error below:

FileNotFoundError: [Errno 2] No such file or directory: '/content/bin/fast_tsne': '/content/bin/fast_tsne'

I tried to change the directory and fix the code but I could not fixed it. I would be very glad if you could help me about the issue.

Kind regards.

linqiaozhi commented 3 years ago

Hi @sabotaha, this response may be too late. But if it is not, I was going to ask you to post your full code. The problem might be that your source() line is wrong. Here is an example:

source('<path to fast_tsne.R'>, chdir=T)

and the binary fast_tsne should be in <path to fast_tsne.R>/bin.